Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4041PSP1 domain protein. (302 aa)    
Predicted Functional Partners:
rny
RNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.904
CSCA_4043
Protein of unknown function DUF970.
  
    0.857
CSCA_4042
DNA polymerase III, delta' subunit.
  
   0.854
CSCA_4040
Hypothetical protein.
       0.821
CSCA_4044
Hypothetical protein.
  
    0.713
CSCA_4045
Orn/Lys/Arg decarboxylase major region.
  
    0.708
CSCA_4046
Hypothetical protein.
       0.692
CSCA_4039
4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.668
CSCA_3146
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
  
 
   0.627
fliE
Flagellar hook-basal body complex subunit FliE.
   
   0.580
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.