Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4079Secretion protein HlyD family protein. (350 aa)    
Predicted Functional Partners:
CSCA_4078
ABC-2 type transporter.
 
  
 0.954
CSCA_4077
Hypothetical protein.
 
    0.952
CSCA_3713
Hypothetical protein.
 
  
 0.805
CSCA_3712
Hypothetical protein.
 
    0.797
CSCA_4080
MarR family transcriptional regulator.
 
  
 0.780
CSCA_4662
ABC-2 type transporter.
 
  
 0.741
CSCA_1681
EmrA-related transporter protein.
  
     0.723
CSCA_2403
EmrA-related transporter protein.
  
     0.710
CSCA_0325
EmrA-related transporter protein.
  
     0.704
CSCA_1073
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.600
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.