Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4081Ig domain protein group 2 domain protein. (404 aa)    
Predicted Functional Partners:
CSCA_4082
Hypothetical protein.
       0.745
CSCA_4083
Hypothetical protein.
       0.520
CSCA_4084
Hypothetical protein.
       0.507
CSCA_4091
Hypothetical protein.
   
    0.491
CSCA_4085
Hypothetical protein.
       0.472
CSCA_1343
Hypothetical protein.
  
 
 0.459
CSCA_2260
Hypothetical protein.
  
 
 0.459
CSCA_3493
Lipolytic protein G-D-S-L family.
  
 
 0.459
CSCA_1174
Hypothetical protein.
  
    0.441
CSCA_2420
Spore coat assembly protein SafA.
  
    0.431
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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