Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_4111Protein of unknown function DUF1667. (121 aa)    
Predicted Functional Partners:
CSCA_4112
FAD dependent oxidoreductase.
 
    0.954
CSCA_0837
Oxidoreductase.
 
    0.807
CSCA_4557
FAD dependent oxidoreductase.
 
    0.807
CSCA_0838
Pyridine nucleotide-disulfide oxidoreductase.
 
    0.794
CSCA_4558
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
    0.794
CSCA_3227
Glycerol-3-phosphate responsive antiterminator, GlpP.
 
    0.680
CSCA_4762
Glycerol-3-phosphate responsive antiterminator, GlpP.
 
    0.642
CSCA_4113
Hypothetical protein.
       0.632
CSCA_4695
Hypothetical protein.
   
    0.596
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.586
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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