Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4182dUTPase. (162 aa)    
Predicted Functional Partners:
CSCA_4181
Protein of unknown function DUF606.
       0.651
CSCA_3707
Hypothetical protein.
  
     0.630
CSCA_3711
Hypothetical protein.
  
     0.622
CSCA_0887
Hypothetical protein.
  
     0.555
CSCA_1401
Hypothetical protein.
  
     0.546
CSCA_4179
Peptidase families S8 and S53.
       0.476
CSCA_2574
Hypothetical protein.
  
     0.453
CSCA_0143
Extracellular neutral metalloprotease NPRE.
  
     0.421
asnS
asparaginyl-tRNA synthetase.
       0.419
CSCA_4183
Hypothetical protein.
       0.418
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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