Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_4231Putative stage V sporulation protein B. (511 aa)    
Predicted Functional Partners:
CSCA_4232
MazG family protein.
  
    0.805
CSCA_2884
Protein of unknown function DUF965; Belongs to the UPF0297 family.
  
     0.723
CSCA_4230
Transcriptional regulator, AbrB family.
 
   
 0.698
CSCA_4234
RNA-binding S4 domain protein.
  
    0.681
CSCA_3511
Protein of unknown function DUF633.
  
     0.647
CSCA_4236
Spore cortex biosynthesis protein YabQ.
 
  
 0.635
CSCA_4233
Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.630
CSCA_4269
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family.
  
    0.600
CSCA_1788
Glutamine synthetase catalytic region.
 
     0.597
CSCA_4235
Sporulation protein YabP.
  
  
 0.597
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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