STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4324Transcriptional regulator, GntR family. (308 aa)    
Predicted Functional Partners:
glmS
Methylaspartate mutase, S subunit; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).
 
     0.881
glmE
Methylaspartate mutase, E subunit; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).
 
     0.845
CSCA_4328
Methylaspartate ammonia-lyase.
 
     0.829
CSCA_4326
Glutamate mutase, MutL.
 
     0.795
CSCA_4323
N-acetylmuramoyl-L-alanine amidase CwlD.
       0.584
CSCA_1302
Hypothetical protein.
  
  
 0.574
CSCA_4329
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit.
       0.559
CSCA_4330
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type.
       0.538
CSCA_4331
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
     0.536
CSCA_4117
Metal dependent phosphohydrolase.
  
     0.530
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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