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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4337PAS modulated sigma54 specific transcriptional regulator, Fis family. (669 aa)    
Predicted Functional Partners:
CSCA_1819
PTS system, glucose-specific IIBC subunit.
  
 
 0.918
CSCA_4686
PTS system, glucose subfamily, IIA subunit.
  
 
 0.918
CSCA_4338
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
  
 
 0.902
CSCA_2593
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
  
  
 0.891
CSCA_3247
PTS system, fructose family, IIA component.
  
  
 0.891
CSCA_3830
RNA polymerase sigma-54 factor.
 
  
 0.871
CSCA_2134
PTS system, fructose subfamily, IIC subunit.
  
  
 0.777
CSCA_3248
Hypothetical protein.
  
  
 0.777
CSCA_3574
PAS domain S-box domain-containing protein.
   
 
 0.733
CSCA_3569
PTS system, glucose subfamily, IIA subunit.
  
 
 0.705
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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