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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4352Thiamine pyrophosphate enzyme. (249 aa)    
Predicted Functional Partners:
CSCA_4353
Pyruvate ferredoxin/flavodoxin oxidoreductase.
 
 0.994
CSCA_4351
3-methyl-2-oxobutanoate dehydrogenase (ferredoxin).
 
 
 0.986
CSCA_3215
Pyruvate:ferredoxin oxidoreductase.
  
 
 0.983
CSCA_1342
Pyruvate ferredoxin/flavodoxin oxidoreductase.
 
 0.976
CSCA_2387
Oxidoreductase subunit.
 
 0.962
CSCA_5033
Pyruvate ferredoxin/flavodoxin oxidoreductase.
 
 0.959
CSCA_1352
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
 
 0.947
CSCA_1340
3-methyl-2-oxobutanoate dehydrogenase (ferredoxin).
 
 
 0.942
CSCA_2389
Keto/oxoacid ferredoxin oxidoreductase, beta subunit.
 
 
 0.942
CSCA_4350
4Fe-4S binding domain protein.
 
  
 0.940
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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