Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4360Transposase protein A. (279 aa)    
Predicted Functional Partners:
CSCA_4362
Putative transposon Tn7 transposition protein TnsC.
 
 
 
 0.989
CSCA_4361
Transposase protein B.
  
 0.984
CSCA_4363
Hypothetical protein.
 
   
 0.942
CSCA_4364
Hypothetical protein.
     
 0.716
CSCA_3172
Hypothetical protein.
  
     0.575
glmS-2
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
     
 0.565
CSCA_3173
Transposase, IS4.
  
     0.467
CSCA_0171
Hypothetical protein.
  
     0.459
CSCA_0180
Hypothetical protein.
  
     0.459
CSCA_4365
Protein of unknown function DUF262.
  
    0.454
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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