Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4420Hypothetical protein; Belongs to the WXG100 family. (98 aa)    
Predicted Functional Partners:
CSCA_4424
Hypothetical protein.
 
 
 0.976
CSCA_4423
Protein of unknown function EssB.
 
  
 0.942
CSCA_2768
Cell division FtsK/SpoIIIE.
  
 
 0.795
CSCA_4425
Hypothetical protein.
 
   
 0.726
CSCA_4421
Hypothetical protein.
       0.535
CSCA_4422
Hypothetical protein.
       0.535
CSCA_4419
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.440
CSCA_0158
YhgE/Pip N-terminal domain protein.
 
   
 0.415
CSCA_1755
Glycoside hydrolase family 18.
  
     0.402
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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