Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4446Stage v sporulation protein ac. (151 aa)    
Predicted Functional Partners:
CSCA_4447
Hypothetical protein.
 
  
 0.923
CSCA_2479
Stage V sporulation protein AD.
 
  
 0.832
CSCA_2848
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.749
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.725
CSCA_3541
Stage II sporulation protein P.
  
  
 0.723
CSCA_3944
Stage II sporulation protein R.
  
   
 0.713
CSCA_3059
Stage IV sporulation protein B.
 
   
 0.712
CSCA_3906
Sporulation transcriptional regulator SpoIIID.
 
   
 0.703
CSCA_3636
Small acid-soluble spore protein alpha/beta type.
  
  
 0.681
CSCA_3526
Sporulation protein YqfD.
  
     0.675
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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