Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_4455Major facilitator superfamily MFS_1. (420 aa)    
Predicted Functional Partners:
CSCA_4454
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
   
 0.952
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
   
 0.877
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
   
 0.856
CSCA_4451
Rhamnulokinase.
 
  
 0.835
CSCA_1649
Xylose isomerase domain protein TIM barrel.
  
  
 0.666
CSCA_4456
Transcriptional regulator, AraC family.
 
    0.555
CSCA_3594
Sugar transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
    0.547
CSCA_0383
Major facilitator superfamily MFS_1.
 
  
 0.453
CSCA_0386
Major facilitator superfamily MFS_1.
 
  
 0.451
CSCA_0378
Major facilitator superfamily MFS_1.
 
  
 0.438
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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