STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4480Microcompartments family protein. (98 aa)    
Predicted Functional Partners:
CSCA_4490
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
 
 0.939
CSCA_1614
Ethanolamine utilization protein EutN.
 
 
 0.904
CSCA_5278
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
 
 0.904
CSCA_4479
Hypothetical protein.
 
     0.810
CSCA_4481
Microcompartments protein.
 
    
0.797
CSCA_4482
Aldehyde dehydrogenase family protein.
 
  
 0.746
CSCA_4478
Hypothetical protein.
 
     0.739
cutC
Formate C-acetyltransferase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
 
     0.724
CSCA_4488
Ethanolamine utilization protein EutJ family protein.
 
  
 0.703
CSCA_4489
Microcompartments protein.
 
   
 0.695
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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