STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4497Microcompartments protein. (97 aa)    
Predicted Functional Partners:
CSCA_4490
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
 
 0.905
CSCA_5278
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
 
 0.881
CSCA_1614
Ethanolamine utilization protein EutN.
 
 
 0.880
CSCA_4496
Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
 
  
 0.730
CSCA_4492
Microcompartments protein.
 
   
 0.706
CSCA_4495
Acetaldehyde dehydrogenase (acetylating).
     
 0.625
CSCA_4493
Ethanolamine utilization EutQ family protein.
 
  
 0.592
CSCA_4485
Microcompartments protein.
 
  
 0.568
CSCA_4494
Microcompartments protein.
 
    
0.551
CSCA_4488
Ethanolamine utilization protein EutJ family protein.
 
  
 0.526
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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