Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4512Desulfoferrodoxin. (124 aa)    
Predicted Functional Partners:
CSCA_3276
Rubrerythrin.
 
  
 0.902
CSCA_0635
Ferritin Dps family protein; Iron-storage protein.
 
  
 0.831
CSCA_0819
Flavin reductase domain protein FMN-binding.
 
  
 0.778
CSCA_2244
Rubredoxin-type Fe(Cys)4 protein.
 
  
 0.723
CSCA_4934
Beta-lactamase domain protein.
 
  
 0.689
CSCA_1492
Beta-lactamase domain protein.
 
  
 0.681
CSCA_1846
acyl-CoA dehydrogenase domain protein.
 
  
 0.667
CSCA_1845
Beta-lactamase domain protein.
  
  
 0.617
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.531
CSCA_2676
Pyridine nucleotide-disulfide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
     
 0.512
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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