Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4517PAP2 family protein. (326 aa)    
Predicted Functional Partners:
CSCA_4874
Hypothetical protein.
  
     0.637
CSCA_2442
Regulatory protein.
 
     0.623
CSCA_3627
AMP-binding enzyme.
   
 0.619
rplF
Ribosomal protein L6 signature 1; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.604
CSCA_2583
Membrane protein, putative.
 
    0.587
CSCA_2761
Hypothetical protein.
 
    0.573
CSCA_1803
Protein of unknown function DUF214.
 
     0.570
CSCA_5266
Hypothetical protein.
 
    0.569
CSCA_4698
40-residue YVTN family beta-propeller repeat protein.
  
    0.526
CSCA_4518
Hypothetical protein.
       0.524
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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