Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_4676ErfK/YbiS/YcfS/YnhG family protein. (233 aa)    
Predicted Functional Partners:
CSCA_4677
Flavin reductase domain protein FMN-binding.
       0.625
CSCA_1061
Spore germination protein KB.
  
     0.624
CSCA_0612
Spore germination protein.
  
     0.622
CSCA_5121
CHAP domain containing protein.
     
 0.593
CSCA_1174
Hypothetical protein.
 
  
 0.559
CSCA_3942
Germination protein YpeB.
 
   
 0.549
CSCA_1059
Spore germination protein.
  
    0.547
CSCA_0613
Germination protein, Ger(x)C family.
  
    0.543
CSCA_3563
Spore germination protein.
  
     0.542
CSCA_4395
Putative transcriptional regulator, CopG family.
  
    0.536
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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