Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4683Hypothetical protein. (117 aa)    
Predicted Functional Partners:
CSCA_4340
Tetratricopeptide repeat protein.
 
  
 0.835
CSCA_3694
Tetratricopeptide TPR_2 repeat protein.
 
 
 
 0.800
CSCA_4778
TPR repeat-containing protein.
 
 
 0.787
CSCA_4005
Hypothetical protein.
  
    0.765
CSCA_4561
Endodeoxyribonuclease RusA.
  
     0.764
CSCA_5255
Exonuclease RNase T and DNA polymerase III.
 
     0.762
CSCA_3695
Transcriptional regulator, XRE family.
 
 
 
 0.757
CSCA_4393
Hypothetical protein.
 
 
   0.757
CSCA_3882
Adenylate cyclase.
  
     0.752
CSCA_1330
Hypothetical protein.
  
    0.751
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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