Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4685Transcriptional antiterminator, BglG. (275 aa)    
Predicted Functional Partners:
CSCA_4686
PTS system, glucose subfamily, IIA subunit.
 
 
 0.964
CSCA_1819
PTS system, glucose-specific IIBC subunit.
 
 
 0.939
CSCA_0095
PTS system beta-glucoside-specific transporter subunit IIBCA.
 
 0.864
CSCA_3569
PTS system, glucose subfamily, IIA subunit.
 
 
 
 0.784
CSCA_3247
PTS system, fructose family, IIA component.
 
  
 0.707
CSCA_2004
Glycoside hydrolase family 1; Belongs to the glycosyl hydrolase 1 family.
 
  
 0.672
CSCA_2593
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
  
  
 0.653
CSCA_0096
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
 
  
 0.645
CSCA_1321
Phosphotransferase system lactose/cellobiose-specific IIB subunit.
 
  
 0.630
CSCA_1320
PTS system transcriptional activator.
 
   
 0.629
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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