Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4690Hypothetical protein. (295 aa)    
Predicted Functional Partners:
CSCA_4005
Hypothetical protein.
  
     0.733
CSCA_4393
Hypothetical protein.
  
     0.722
CSCA_4683
Hypothetical protein.
 
     0.717
CSCA_4698
40-residue YVTN family beta-propeller repeat protein.
 
     0.667
CSCA_4689
Hypothetical protein.
       0.659
CSCA_4778
TPR repeat-containing protein.
 
     0.645
CSCA_4343
Cell wall hydrolase SleB.
  
    0.611
murA-2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
    0.602
CSCA_2771
Sporulation protein, YlmC/YmxH family.
  
     0.569
CSCA_4163
Primosome, DnaD subunit.
  
     0.529
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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