Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4697Hypothetical protein. (422 aa)    
Predicted Functional Partners:
CSCA_5248
Hypothetical protein.
  
 
 0.870
CSCA_1320
PTS system transcriptional activator.
   
 
 0.704
CSCA_1760
Multi-sensor hybrid histidine kinase.
    
 
 0.699
CSCA_1182
PAS/PAC sensor hybrid histidine kinase.
    
 
 0.670
CSCA_4155
Histidine kinase.
    
 
 0.670
CSCA_0017
Band 7 protein.
  
  
 0.537
CSCA_4698
40-residue YVTN family beta-propeller repeat protein.
       0.477
CSCA_0502
Diguanylate cyclase (GGDEF) domain protein.
   
 
 0.476
CSCA_3574
PAS domain S-box domain-containing protein.
    
 
 0.428
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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