STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_469840-residue YVTN family beta-propeller repeat protein. (525 aa)    
Predicted Functional Partners:
CSCA_4690
Hypothetical protein.
 
     0.667
CSCA_4343
Cell wall hydrolase SleB.
  
    0.611
CSCA_3720
Hypothetical protein.
  
     0.597
CSCA_4699
Hypothetical protein.
       0.588
CSCA_2761
Hypothetical protein.
  
     0.569
CSCA_4700
Hypothetical protein.
       0.555
CSCA_2583
Membrane protein, putative.
  
     0.544
CSCA_2715
Hypothetical protein.
  
     0.538
CSCA_4517
PAP2 family protein.
  
    0.526
CSCA_1423
Phage protein.
  
     0.522
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.