Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4707Triple helix repeat-containing collagen. (371 aa)    
Predicted Functional Partners:
CSCA_4708
Hypothetical protein.
 
 
0.878
CSCA_4709
Collagen triple helix repeat-containing protein.
 
 
0.861
CSCA_1225
Triple helix repeat-containing collagen.
 
 
 0.859
CSCA_4706
Glycosyl transferase family 2.
 
  
 0.815
CSCA_3200
CheC, inhibitor of MCP methylation / FliN fusion protein.
   
 
 0.781
CSCA_4800
Hypothetical protein.
  
     0.561
CSCA_2192
Conserved unknown protein.
 
   
 0.557
CSCA_4705
Glycosyl transferase group 1.
 
  
 0.541
CSCA_0177
ABC transporter, ATP-binding protein.
  
  
 0.521
CSCA_5252
ABC transporter, ATP-binding protein.
  
  
 0.521
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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