Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4733ABC transporter, ATP-binding protein. (251 aa)    
Predicted Functional Partners:
CSCA_4734
ABC transporter, permease protein.
 
 
 0.984
CSCA_4732
NlpA lipoprotein.
 
 
 0.979
CSCA_0107
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.880
CSCA_5145
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.859
CSCA_2525
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.851
CSCA_5149
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.822
CSCA_0108
NMT1/THI5 like domain protein.
 
 
 0.808
CSCA_0905
Binding-protein-dependent transport systems inner membrane component.
 
 0.776
CSCA_4739
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
 
     0.768
CSCA_4737
4-aminobutyrate aminotransferase-related aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.745
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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