STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4792Hypothetical protein. (419 aa)    
Predicted Functional Partners:
CSCA_4793
Glycosyl transferase group 1.
 
  
 0.906
murJ-3
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
     
 0.812
CSCA_4780
Polysaccharide biosynthesis protein CapD.
  
  
 0.675
CSCA_4785
Acyltransferase.
  
    0.653
CSCA_4791
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
     
 0.627
CSCA_3170
Polysaccharide biosynthesis protein CapD.
  
  
 0.625
CSCA_0025
Capsular polysaccharide biosynthsis protein.
  
  
 0.615
CSCA_4790
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase.
  
  
 0.615
CSCA_4799
Undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.615
CSCA_4795
Membrane protein, putative.
     
 0.593
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.