Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_4811Hypothetical protein. (73 aa)    
Predicted Functional Partners:
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
       0.750
CSCA_0612
Spore germination protein.
  
     0.647
CSCA_4070
Hypothetical protein.
  
     0.646
CSCA_4696
Glucose-inhibited division protein A.
  
     0.630
CSCA_4069
pro-sigmaK processing inhibitor BofA.
  
     0.579
CSCA_0613
Germination protein, Ger(x)C family.
  
     0.576
CSCA_0805
Amine oxidase.
  
     0.538
CSCA_4812
DNA polymerase beta domain protein region.
       0.534
CSCA_3946
Spore germination protein.
  
     0.510
CSCA_4695
Hypothetical protein.
  
     0.509
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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