Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4824Hypothetical protein. (563 aa)    
Predicted Functional Partners:
CSCA_1338
Hypothetical protein.
  
 
 0.704
CSCA_4134
Cobyrinic acid ac-diamide synthase.
  
 
 0.704
CSCA_5029
Hypothetical protein.
  
 
 0.704
CSCA_4825
Hypothetical protein.
       0.678
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.650
CSCA_2049
Hypothetical protein.
  
     0.567
CSCA_3604
Membrane spanning protein.
 
     0.477
CSCA_5090
Phage terminase GpA.
 
  
 0.443
CSCA_5092
Hypothetical protein.
 
    0.425
CSCA_2435
Membrane-bound metal-dependent hydrolase.
  
     0.417
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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