Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4838Hypothetical protein. (597 aa)    
Predicted Functional Partners:
CSCA_4839
Phage portal protein, SPP1 family.
 
     0.939
CSCA_4840
Phage head morphogenesis protein, SPP1 gp7 family.
 
     0.910
CSCA_4841
Hypothetical protein.
 
     0.875
CSCA_2061
Spore germination protein.
  
     0.600
CSCA_4842
Prophage protein.
 
     0.584
CSCA_4837
Hypothetical protein.
       0.566
CSCA_2060
Germination protein, Ger(x)C family.
  
     0.551
CSCA_4429
Ankyrin repeat-containing protein.
  
     0.524
CSCA_1830
Hypothetical protein.
  
     0.496
CSCA_4358
Hypothetical protein.
  
     0.481
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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