Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
CSCA_4946NADH dehydrogenase (quinone). (601 aa)    
Predicted Functional Partners:
CSCA_0811
NADH dehydrogenase (quinone).
  
 0.999
CSCA_2650
NADH dehydrogenase (quinone).
  
 0.999
CSCA_4947
Ferredoxin.
 
 0.999
CSCA_0810
Hydrogenase, Fe-only.
 
 
 0.998
CSCA_1571
Oxidoreductase.
  
 
 0.998
CSCA_2651
Hydrogenase, Fe-only.
 
 
 0.998
CSCA_4943
Uptake hydrogenase.
 
 
 0.998
CSCA_4945
NADH dehydrogenase (ubiquinone) 24 kDa subunit.
 0.996
CSCA_1576
NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 0.990
CSCA_1735
Succinate dehydrogenase and fumarate reductase iron-sulfur protein.
  
 
 0.990
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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