Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
CSCA_4949Hydrogenase, Fe-only. (460 aa)    
Predicted Functional Partners:
CSCA_4950
4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
 0.993
CSCA_4948
4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
 0.990
CSCA_4944
Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.966
CSCA_1098
NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein.
 
 
 0.962
CSCA_0811
NADH dehydrogenase (quinone).
 
 
 
 0.961
CSCA_2582
Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.957
CSCA_2650
NADH dehydrogenase (quinone).
   
 
 0.951
CSCA_4946
NADH dehydrogenase (quinone).
 
 
0.946
CSCA_1572
Hypothetical protein.
 
 
 
 0.936
CSCA_0253
Anaerobic dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.912
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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