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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_49504Fe-4S ferredoxin iron-sulfur binding domain protein. (192 aa)    
Predicted Functional Partners:
CSCA_4949
Hydrogenase, Fe-only.
   
 
 0.960
CSCA_1577
NADH dehydrogenase (ubiquinone) 30 kDa subunit.
 
 
 0.951
CSCA_1576
NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 
 0.918
CSCA_4944
Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.868
CSCA_0810
Hydrogenase, Fe-only.
  
 
 0.856
CSCA_2651
Hydrogenase, Fe-only.
  
 
 0.856
CSCA_4943
Uptake hydrogenase.
  
 
 0.856
CSCA_2582
Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.829
CSCA_2754
Nitrate reductase, catalytic subunit.
 
 
 0.774
CSCA_3215
Pyruvate:ferredoxin oxidoreductase.
  
  
 0.763
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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