Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_49504Fe-4S ferredoxin iron-sulfur binding domain protein. (192 aa)    
Predicted Functional Partners:
CSCA_4949
Hydrogenase, Fe-only.
   
 0.993
CSCA_4944
Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.988
CSCA_2582
Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.984
CSCA_4948
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 
0.967
CSCA_1577
NADH dehydrogenase (ubiquinone) 30 kDa subunit.
 
 
 0.919
CSCA_1576
NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 
 0.910
fhs
Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
    
 0.906
fhs-2
Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
    
 0.906
CSCA_3565
Formylmethanofuran dehydrogenase subunit E region.
     
  0.900
CSCA_0811
NADH dehydrogenase (quinone).
  
 
 0.896
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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