Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4961Rod shape-determining protein MreC. (182 aa)    
Predicted Functional Partners:
CSCA_4962
Rod shape-determining protein MreD.
 
 
 0.991
CSCA_4959
Cell shape determining protein, MreB/Mrl family.
 
 
 0.962
CSCA_4963
Penicillin-binding protein transpeptidase.
 
 
 0.957
minC
Septum formation inhibitor; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
  
  
 0.940
CSCA_3905
Cell shape determining protein, MreB/Mrl family.
 
 
 0.924
CSCA_2418
Cell shape determining protein, MreB/Mrl family.
 
 
 0.916
CSCA_4964
Penicillin-binding protein transpeptidase.
 
 
 0.904
CSCA_4958
DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.891
CSCA_4966
Septum site-determining protein MinD.
  
    0.869
CSCA_4957
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.860
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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