Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4963Penicillin-binding protein transpeptidase. (886 aa)    
Predicted Functional Partners:
CSCA_4961
Rod shape-determining protein MreC.
 
 
 0.957
CSCA_4964
Penicillin-binding protein transpeptidase.
 
  
 
0.944
CSCA_4968
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 0.917
CSCA_3555
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 0.898
CSCA_4962
Rod shape-determining protein MreD.
 
  
 0.883
CSCA_4959
Cell shape determining protein, MreB/Mrl family.
 
 
 
 0.880
CSCA_4406
Cell cycle protein; Belongs to the SEDS family.
 
 
 0.839
CSCA_3905
Cell shape determining protein, MreB/Mrl family.
 
 
 
 0.810
CSCA_2418
Cell shape determining protein, MreB/Mrl family.
 
 
 
 0.808
CSCA_3115
Stage V sporulation protein E; Belongs to the SEDS family.
 
 
 0.795
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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