Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4968Rod shape-determining protein RodA; Belongs to the SEDS family. (373 aa)    
Predicted Functional Partners:
CSCA_4964
Penicillin-binding protein transpeptidase.
 
 
 0.923
CSCA_4963
Penicillin-binding protein transpeptidase.
 
 
 0.917
CSCA_2652
Putative stage V sporulation protein D.
 
 
 0.900
CSCA_3119
Stage V sporulation protein D.
 
 
 0.892
CSCA_3114
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
 
 0.883
CSCA_4407
Peptidoglycan glycosyltransferase.
 
 0.875
CSCA_4959
Cell shape determining protein, MreB/Mrl family.
 
 
 0.864
murC
UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.863
CSCA_2874
Penicillin-binding protein transpeptidase.
 
 
 0.838
CSCA_3905
Cell shape determining protein, MreB/Mrl family.
 
 
 0.818
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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