Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_4971Stage IV sporulation protein FB. (281 aa)    
Predicted Functional Partners:
CSCA_4970
Peptidase M23.
       0.728
CSCA_4973
Hypothetical protein.
 
     0.709
CSCA_4972
Radical SAM domain protein.
       0.664
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
       0.578
CSCA_4962
Rod shape-determining protein MreD.
 
     0.538
CSCA_2982
Stage II sporulation protein M.
 
  
 0.535
CSCA_3906
Sporulation transcriptional regulator SpoIIID.
   
  
 0.530
CSCA_3059
Stage IV sporulation protein B.
  
   
 0.524
CSCA_4974
Ribonuclease.
       0.516
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
  
 0.513
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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