Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CSCA_4985Competence protein ComEA helix-hairpin-helix repeat protein. (196 aa)    
Predicted Functional Partners:
CSCA_3092
Type II secretion system protein.
  
  
 0.873
CSCA_3093
Hypothetical protein.
  
  
 0.859
CSCA_3900
Hypothetical protein.
   
  
 0.851
CSCA_4604
Peptidase A24A domain protein.
   
  
 0.787
CSCA_4984
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.683
CSCA_3899
Hypothetical protein.
  
  
 0.663
CSCA_3549
ComEC/Rec2-related protein.
  
  
 0.660
CSCA_3732
DNA protecting protein DprA.
  
  
 0.641
CSCA_3922
CMP/dCMP deaminase zinc-binding.
  
  
 0.637
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.609
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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