STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_5000Amino acid ABC transporter permease. (212 aa)    
Predicted Functional Partners:
CSCA_4999
Amino acid ABC transporter periplasmic solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 0.999
CSCA_2424
Extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.992
CSCA_2423
Extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.991
CSCA_0248
Cystine transporter subunit.
 
 0.985
CSCA_3663
Extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.985
CSCA_0250
Polar amino acid ABC transporter ATP-binding protein.
 
 0.938
CSCA_3661
ABC transporter related protein.
 
 0.937
CSCA_1843
ABC transporter related protein.
 
 0.936
CSCA_2915
Polar amino acid ABC transporter ATPase.
 
 0.935
CSCA_0251
Amino acid ABC transporter.
 
 0.896
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.