STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_5014Protein of unknown function DUF1116. (421 aa)    
Predicted Functional Partners:
CSCA_5013
FdrA family protein.
     0.994
CSCA_5015
Hypothetical protein.
 
 
 0.943
CSCA_5012
Ureidoglycolate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
  
 0.930
CSCA_5010
Major facilitator superfamily MFS_1.
 
    0.865
CSCA_5011
Allantoin catabolism protein.
 
    0.864
CSCA_2261
Dihydrolipoamide dehydrogenase.
  
 
 0.862
CSCA_1735
Succinate dehydrogenase and fumarate reductase iron-sulfur protein.
  
 
 0.854
CSCA_5007
Hypothetical protein.
 
   
 0.839
CSCA_5008
Hypothetical protein.
 
   
 0.834
CSCA_4946
NADH dehydrogenase (quinone).
  
 
 0.831
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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