Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_5016Major facilitator superfamily MFS_1. (422 aa)    
Predicted Functional Partners:
CSCA_5015
Hypothetical protein.
 
     0.758
CSCA_5012
Ureidoglycolate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.661
CSCA_5013
FdrA family protein.
 
    0.646
CSCA_5014
Protein of unknown function DUF1116.
 
    0.643
CSCA_5010
Major facilitator superfamily MFS_1.
 
    
0.505
CSCA_0898
Hypothetical protein.
  
  
 0.463
CSCA_5011
Allantoin catabolism protein.
 
     0.455
CSCA_5007
Hypothetical protein.
 
     0.434
CSCA_5017
Carbamate kinase; Belongs to the carbamate kinase family.
       0.430
CSCA_3594
Sugar transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
  
 0.412
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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