Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_5029Hypothetical protein. (230 aa)    
Predicted Functional Partners:
CSCA_5030
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
     0.871
CSCA_5031
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
 
    0.761
CSCA_5033
Pyruvate ferredoxin/flavodoxin oxidoreductase.
 
   
 0.758
CSCA_5203
Methylase; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.752
CSCA_5032
3-methyl-2-oxobutanoate dehydrogenase (ferredoxin).
 
   
 0.719
CSCA_1339
4Fe-4S binding domain protein.
 
     0.714
CSCA_4350
4Fe-4S binding domain protein.
 
     0.714
CSCA_1910
DNA-binding protein; Belongs to the ParB family.
  
 
 0.704
CSCA_4133
parB-like partition protein; Belongs to the ParB family.
  
 
 0.704
CSCA_4135
parB-like partition protein; Belongs to the ParB family.
  
 
 0.704
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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