Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CSCA_3113 | CSCA_4665 | CSCA_3113 | CSCA_4665 | Protein of unknown function DUF881. | Transcriptional regulator, TetR family. | 0.467 |
CSCA_3113 | CSCA_5100 | CSCA_3113 | CSCA_5100 | Protein of unknown function DUF881. | Putative translation initiation inhibitor. | 0.455 |
CSCA_4626 | CSCA_5100 | CSCA_4626 | CSCA_5100 | Threonine dehydratase. | Putative translation initiation inhibitor. | 0.424 |
CSCA_4626 | guaA | CSCA_4626 | CSCA_4595 | Threonine dehydratase. | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 0.427 |
CSCA_4665 | CSCA_3113 | CSCA_4665 | CSCA_3113 | Transcriptional regulator, TetR family. | Protein of unknown function DUF881. | 0.467 |
CSCA_4665 | CSCA_5100 | CSCA_4665 | CSCA_5100 | Transcriptional regulator, TetR family. | Putative translation initiation inhibitor. | 0.467 |
CSCA_5098 | CSCA_5099 | CSCA_5098 | CSCA_5099 | Hypothetical protein. | Hypothetical protein. | 0.686 |
CSCA_5098 | CSCA_5100 | CSCA_5098 | CSCA_5100 | Hypothetical protein. | Putative translation initiation inhibitor. | 0.474 |
CSCA_5099 | CSCA_5098 | CSCA_5099 | CSCA_5098 | Hypothetical protein. | Hypothetical protein. | 0.686 |
CSCA_5099 | CSCA_5100 | CSCA_5099 | CSCA_5100 | Hypothetical protein. | Putative translation initiation inhibitor. | 0.528 |
CSCA_5100 | CSCA_3113 | CSCA_5100 | CSCA_3113 | Putative translation initiation inhibitor. | Protein of unknown function DUF881. | 0.455 |
CSCA_5100 | CSCA_4626 | CSCA_5100 | CSCA_4626 | Putative translation initiation inhibitor. | Threonine dehydratase. | 0.424 |
CSCA_5100 | CSCA_4665 | CSCA_5100 | CSCA_4665 | Putative translation initiation inhibitor. | Transcriptional regulator, TetR family. | 0.467 |
CSCA_5100 | CSCA_5098 | CSCA_5100 | CSCA_5098 | Putative translation initiation inhibitor. | Hypothetical protein. | 0.474 |
CSCA_5100 | CSCA_5099 | CSCA_5100 | CSCA_5099 | Putative translation initiation inhibitor. | Hypothetical protein. | 0.528 |
CSCA_5100 | guaA | CSCA_5100 | CSCA_4595 | Putative translation initiation inhibitor. | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 0.406 |
CSCA_5100 | metG | CSCA_5100 | CSCA_4010 | Putative translation initiation inhibitor. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.407 |
CSCA_5100 | nnrE | CSCA_5100 | CSCA_4392 | Putative translation initiation inhibitor. | Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...] | 0.557 |
CSCA_5100 | ribBA | CSCA_5100 | CSCA_3475 | Putative translation initiation inhibitor. | GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.446 |
CSCA_5100 | rph | CSCA_5100 | CSCA_4620 | Putative translation initiation inhibitor. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.758 |
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