KGL11794.1 protein (Helicobacter sp. MIT115569)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

KGL11794.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)

Predicted Functional Partners:

KGL11792.1

0.962

gabD

0.595

csrA

0.495

KGL11033.1

0.495

KGL11492.1

0.488

KGL10542.1

0.445

rpoD

0.426

KGL09248.1

0.426

KGL09249.1

0.426

KGL11882.1

0.408

Your Current Organism:

Helicobacter sp. MIT115569

NCBI taxonomy Id: 1548151
Other names: H. sp. MIT 11-5569, Helicobacter sp. MIT 11-5569

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGL09248.1	KGL09249.1	LS70_10400	LS70_10405	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
KGL09248.1	KGL11033.1	LS70_10400	LS70_05970	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.598
KGL09248.1	KGL11794.1	LS70_10400	LS70_03700	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
KGL09248.1	csrA	LS70_10400	LS70_02045	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.	0.426
KGL09249.1	KGL09248.1	LS70_10405	LS70_10400	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
KGL09249.1	KGL11033.1	LS70_10405	LS70_05970	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.598
KGL09249.1	KGL11794.1	LS70_10405	LS70_03700	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
KGL09249.1	csrA	LS70_10405	LS70_02045	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.	0.426
KGL10542.1	KGL11794.1	LS70_08540	LS70_03700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
KGL11033.1	KGL09248.1	LS70_05970	LS70_10400	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
KGL11033.1	KGL09249.1	LS70_05970	LS70_10405	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
KGL11033.1	KGL11794.1	LS70_05970	LS70_03700	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
KGL11033.1	csrA	LS70_05970	LS70_02045	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.	0.497
KGL11033.1	rpoD	LS70_05970	LS70_00825	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.598
KGL11492.1	KGL11794.1	LS70_01725	LS70_03700	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
KGL11792.1	KGL11794.1	LS70_03685	LS70_03700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
KGL11794.1	KGL09248.1	LS70_03700	LS70_10400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
KGL11794.1	KGL09249.1	LS70_03700	LS70_10405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor RpoD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
KGL11794.1	KGL10542.1	LS70_03700	LS70_08540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
KGL11794.1	KGL11033.1	LS70_03700	LS70_05970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.495