STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXO01382.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family. (284 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.849
KXO01001.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.791
der
GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.722
KXO01285.1
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.618
KXN98143.1
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.618
KXO00247.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.610
KXN98586.1
Tungsten formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.610
KXO01383.1
GH3 auxin-responsive promoter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
KXO01404.1
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.465
KXN98468.1
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
   
 0.465
Your Current Organism:
Vitellibacter aquimaris
NCBI taxonomy Id: 1548749
Other names: Aequorivita aquimaris, Aequorivita sp. D-24, DSM 101732, KCTC 42708, V. aquimaris, Vitellibacter aquimaris Thevarajoo et al. 2016, Vitellibacter sp. D-24, strain D-24
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