STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPN62295.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa)    
Predicted Functional Partners:
KPN63611.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.808
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.778
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.679
KPN64488.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.619
KPN62296.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.572
ndk
Phosphodiesterase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.518
KPN61676.1
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.509
KPN61675.1
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.477
KPN63419.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.473
KPN64568.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.472
Your Current Organism:
Aliiroseovarius crassostreae
NCBI taxonomy Id: 154981
Other names: A. crassostreae, Aliiroseovarius crassostreae (Boettcher et al. 2005) Park et al. 2015, CVSP bacterium CV919-312, Crassostrea virginica symbiont, DSM 16950, Pseudoroseovarius crassostreae, Pseudoroseovarius crassostreae (Boettcher et al. 2005) Sun et al. 2015, Roseovarius crassostreae, Roseovarius crassostreae Boettcher et al. 2005, strain CV919-312
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.