STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPN64202.1Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (360 aa)    
Predicted Functional Partners:
KPN64603.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
AKJ29_16285
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
0.992
KPN63567.1
Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
KPN64200.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
KPN63568.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.974
KPN63565.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
0.967
KPN63566.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.888
AKJ29_16305
Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
KPN64204.1
FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
Your Current Organism:
Aliiroseovarius crassostreae
NCBI taxonomy Id: 154981
Other names: A. crassostreae, Aliiroseovarius crassostreae (Boettcher et al. 2005) Park et al. 2015, CVSP bacterium CV919-312, Crassostrea virginica symbiont, DSM 16950, Pseudoroseovarius crassostreae, Pseudoroseovarius crassostreae (Boettcher et al. 2005) Sun et al. 2015, Roseovarius crassostreae, Roseovarius crassostreae Boettcher et al. 2005, strain CV919-312
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