STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JN27_11870Allantoate amidohydrolase; Bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)    
Predicted Functional Partners:
JN27_11625
Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.983
JN27_11845
Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.936
JN27_11855
Phenylhydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.919
argA
Amino acid acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the acetyltransferase family. ArgA subfamily.
  
 
 0.776
JN27_11885
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.736
JN27_11840
Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.718
JN27_11620
5-hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
  
 0.715
JN27_11860
Allantoate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.702
JN27_09005
5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.689
JN27_06010
FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.672
Your Current Organism:
Massilia sp. BSC265
NCBI taxonomy Id: 1549812
Other names: M. sp. BSC265
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