STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIT08117.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)    
Predicted Functional Partners:
AIT08214.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.738
AIT05566.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.718
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
     
 0.584
AIT06441.1
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.515
AIT07758.1
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.498
AIT07696.1
Involved in the transport of aldohexuronates; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.458
AIT06442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.454
AIT06040.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.433
AIT07571.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.433
AIT08123.1
Hexuronate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.430
Your Current Organism:
Sphingomonas taxi
NCBI taxonomy Id: 1549858
Other names: ATCC 55669, Erwinia taxi, S. taxi, strain STJ.EPI.H7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.