STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF35771.1RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (266 aa)    
Predicted Functional Partners:
SDG12542.1
Hypothetical protein.
  
 
 
 0.977
SDF25476.1
RNA polymerase sigma factor for flagellar operon FliA; Belongs to the sigma-70 factor family.
  
  
 
0.949
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.889
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.886
SDF25843.1
Flagellar hook protein FlgE.
 
  
 0.868
SDF25645.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
 
 0.866
SDE99524.1
Anti-anti-sigma factor.
 
 
 0.858
SDF25708.1
Flagellar motor switch protein FliG.
 
  
 0.850
SDF25883.1
Chemotaxis protein MotA.
 
  
 0.845
SDF25962.1
Flagellar motor switch protein FliN/FliY.
 
  
 0.840
Your Current Organism:
Blastococcus sp. DSM 44268
NCBI taxonomy Id: 1550231
Other names: B. sp. DSM 44268
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.