STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF18175.1Tetratricopeptide repeat-containing protein. (109 aa)    
Predicted Functional Partners:
SDE58639.1
Hypothetical protein.
 
 
 
 0.906
SDF42678.1
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II.
    
  0.838
SDF58639.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 0.812
SDE51512.1
Hypothetical protein.
 
  
 0.697
SDF43125.1
Hypothetical protein.
    
 0.645
SDF18203.1
Protein of unknown function.
 
     0.603
SDE59393.1
Protein of unknown function.
  
     0.568
SDE85449.1
Glyoxylase, beta-lactamase superfamily II.
 
  
  0.519
SDE26930.1
TIGR03089 family protein.
  
     0.514
SDE36159.1
Hypothetical protein.
  
     0.511
Your Current Organism:
Blastococcus sp. DSM 44205
NCBI taxonomy Id: 1550233
Other names: B. sp. DSM 44205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.